You may not know that the Environmental Data Initiative provides an embargo service to temporarily block access to data tables (and other types of data) in your EDI uploaded data packages, but it does. We provide this service to satisfy requirements of many journals who request that data accompanying a manuscript be archived in a recognized data repository and assigned a valid Digital Object Identifier (DOI) before the manuscript is reviewed. It is often the case that the journal or manuscript author prefers that the data be off limits to the general public until the manuscript is fully published. For this reason, EDI will apply a temporary embargo on the data elements of your data package (metadata, however, are not permitted to be embargoed) at your request – all you have to do is ask through our support email address or directly on our Slack channel. We will remove the embargo once you let us know that the manuscript has been published. The best part is that the DOI remains the same before and after the embargo. Because EDI is a strong proponent of publicly accessible data, we will periodically reach out to owners of embargoed data to confirm the continued need of the embargo. Lastly, please let us know if and how we can improve this service.
The EDI technical team recently modified the view of user contributed journal citations associated with a specific version of a data package so that the citation is now displayed on all versions of the data package, not just the version for which the citation is relevant. This enhancement allows users who browse the data package metadata landing page to see all citations related to data package series regardless of what version of the data package they are viewing. User contributed journal citations provide an easy way for the author of a data paper (or others) to increase the impact factor of the data package by directly linking the published manuscript to the supporting data package found in the EDI data repository. In fact, older manuscripts that utilize an EDI data package may be added to the list of journal citations even if the data package DOI was not available at the time of publication. We are currently exploring options for updating the DataCite DOI metadata of the data package with these citations so that downstream services may take advantage of this crowd-sourced information.
For an example, check out the “Journal Citations” for this data package on the EDI repository landing page:
Beaufort Lagoon Ecosystems LTER and V. Lougheed. 2020. Carbon flux from aquatic ecosystems of the Arctic Coastal Plain along the Beaufort Sea, Alaska, 2010-2018 ver 7. Environmental Data Initiative. https://doi.org/10.6073/pasta/e6c261fbd143e720af5a46a9a131a616. Accessed 2020-05-22.
We’d like your feedback on a new EMLassemblyline feature that supports annotation of both new and existing EML documents. Continue reading “RFC: Annotating EML with the EMLassemblyline R package”
The EDI technical team has released Cite, a lightweight web-service that generates citations for data packages archived in the EDI data repository. Cite is simple to use and requires only the EDI data package identifier appended to the end of the Cite URL: “https://cite.edirepository.org/cite/”. For example, the URL “https://cite.edirepository.org/cite/edi.460.1”, when entered into a web-browser query field, returns the following ESIP-stylized citation:
Armitage, A.R., C.A. Weaver, J.S. Kominoski, and S.C. Pennings. 2020.
Hurricane Harvey: Coastal wetland plant responses and recovery in Texas: 2014-2019 ver 1.
Environmental Data Initiative.
Citations are generated from information found in the data package’s EML document, including the title and creator elements, and from resource information in the EDI data repository, namely the repository name, archive date, data package revision value, and digital object identifier (DOI). This information is then stylized (think “layout”) according to recommended best practices published by community organizations, such as ESIP. Citations are formatted (think “presentation”) based on the mime-type set into the HTTP request accept header field. In the above example, the citation is formatted with HTML attributes, as demonstrated by the anchor tags and HREF surrounding the DOI URL string, since the web-browser automatically requests that responses be returned as “text/html”. Cite also supports additional citation styles (Dryad, BibTex, and raw JSON) and output mime-type formats (text/plain and application/json). Design of the Cite service framework allows new styles and formats to be added with relative ease. The motivation for Cite is to provide a consistent and simple interface for generating citations from data packages found in the EDI data repository. Cite is now being used in the EDI Data Portal to display citations on the data package metadata summary pages (aka, “landing pages”). Details of the Cite web-service can be found at https://github.com/PASTAplus/cite.
Dear EDI user,
The Environmental Data Initiative